MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.25692623572408896
cnr4.899638714870142
efc0.5750024417113333
fber111.49128723144531
fwhmavg3.689413333333333
fwhmx3.60223
fwhmy3.89221
fwhmz3.5738
icvscsf0.19321251102231157
icvsgm0.4651430771119903
icvswm0.3416444118656981
inumed0.816685140132904
inurange0.2625608026981354
qi10.0
qi20.000961357857970096
rpvecsf25.23954350459108
rpvegm12.026216332633375
rpvewm19.3559454429253
sizex180
sizey256
sizez256
snrcsf2.3727572050855055
snrgm10.084641865620132
snrtotal11.710348629225729
snrwm22.673646816971555
snrdcsf15.794639002880437
snrdgm33.45442528812385
snrdtotal34.318007659699646
snrdwm53.70495868809464
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.9855341382434588
summarybgmad12.198925971984863
summarybgmean48.68705368041992
summarybgmedian47.91621017456055
summarybgn3162428.0
summarybgp0529.80775470733643
summarybgp9570.50517501831054
summarybgstdv12.729597091674805
summarycsfk0.40599558130775115
summarycsfmad145.41445922851562
summarycsfmean298.77484130859375
summarycsfmedian294.10308837890625
summarycsfn9136.0
summarycsfp05123.04522705078125
summarycsfp95494.6703414916992
summarycsfstdv123.94314575195312
summarygmk0.310439219885732
summarygmmad58.04038619995117
summarygmmean623.66357421875
summarygmmedian622.93603515625
summarygmn38151.0
summarygmp05522.3628540039062
summarygmp95728.1742248535156
summarygmstdv61.769954681396484
summarywmk1.2595487462739872
summarywmmad38.83976364135742
summarywmmean997.2921142578125
summarywmmedian1000.0098266601562
summarywmn182314.0
summarywmp05919.4185455322265
summarywmp951063.7267456054688
summarywmstdv44.10437774658203
tpmoverlapcsf0.20978061854839325
tpmoverlapgm0.5274969339370728
tpmoverlapwm0.5326118469238281
wm2max0.7296406317694933

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5suma7508a9f4065b8794dd60965935843a7
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.