MRIQC: individual T1w report

Summary

Subject ID: 054_ExercisePre.
Date and time: 2018-05-06, 21:58.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.25692623572408896
cnr			4.899638714870142
efc			0.5750024417113333
fber			111.49128723144531
fwhm	avg		3.689413333333333
fwhm	x		3.60223
fwhm	y		3.89221
fwhm	z		3.5738
icvs	csf		0.19321251102231157
icvs	gm		0.4651430771119903
icvs	wm		0.3416444118656981
inu	med		0.816685140132904
inu	range		0.2625608026981354
qi	1		0.0
qi	2		0.000961357857970096
rpve	csf		25.23954350459108
rpve	gm		12.026216332633375
rpve	wm		19.3559454429253
size	x		180
size	y		256
size	z		256
snr	csf		2.3727572050855055
snr	gm		10.084641865620132
snr	total		11.710348629225729
snr	wm		22.673646816971555
snrd	csf		15.794639002880437
snrd	gm		33.45442528812385
snrd	total		34.318007659699646
snrd	wm		53.70495868809464
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.9855341382434588
summary	bg	mad	12.198925971984863
summary	bg	mean	48.68705368041992
summary	bg	median	47.91621017456055
summary	bg	n	3162428.0
summary	bg	p05	29.80775470733643
summary	bg	p95	70.50517501831054
summary	bg	stdv	12.729597091674805
summary	csf	k	0.40599558130775115
summary	csf	mad	145.41445922851562
summary	csf	mean	298.77484130859375
summary	csf	median	294.10308837890625
summary	csf	n	9136.0
summary	csf	p05	123.04522705078125
summary	csf	p95	494.6703414916992
summary	csf	stdv	123.94314575195312
summary	gm	k	0.310439219885732
summary	gm	mad	58.04038619995117
summary	gm	mean	623.66357421875
summary	gm	median	622.93603515625
summary	gm	n	38151.0
summary	gm	p05	522.3628540039062
summary	gm	p95	728.1742248535156
summary	gm	stdv	61.769954681396484
summary	wm	k	1.2595487462739872
summary	wm	mad	38.83976364135742
summary	wm	mean	997.2921142578125
summary	wm	median	1000.0098266601562
summary	wm	n	182314.0
summary	wm	p05	919.4185455322265
summary	wm	p95	1063.7267456054688
summary	wm	stdv	44.10437774658203
tpm	overlap	csf	0.20978061854839325
tpm	overlap	gm	0.5274969339370728
tpm	overlap	wm	0.5326118469238281
wm2max			0.7296406317694933

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	a7508a9f4065b8794dd60965935843a7
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.